Sample statistics

The quality page shows some metrics on the imported VCF. It is available through the drop-down menu next to the sample name on top of the screen.

For some of the provided parameters, Moon indicates whether the value is within the expected range for WES or WGS. Hovering over the icon gives you some more information on the expected range. The following parameters are provided:

  • Total number of called variants, number of SNVs and indels
  • Heterozygous/homozygous ratio
  • Transition/transversion ratio
  • % allelic imbalance
  • Average depth of coverage
  • Median depth of coverage
  • Maximum depth
  • Depth distribution

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